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BALB_cJ_v1

Organism name:
Mus musculus (house mouse)
Infraspecific name:
Strain: BALB/cJ
Sex:
female
BioSample:
SAMN04489816
BioProject:
PRJNA310854
Submitter:
Wellcome Trust Sanger Institute
Date:
2016/05/09
Assembly level:
Chromosome
Genome representation:
full
Excluded from RefSeq:
  • genome length too small
GenBank assembly accession:
GCA_001632525.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LVXK01
Assembly method:
SGA v. 0.9.19; SOAP denovo2 v. r240; Ragout v. 2.0b
Expected final version:
no
Reference guided assembly:
GCA_000001635.2
Genome coverage:
60.0x
Sequencing technology:
Illumina

IDs: 738451 [UID] 3227818 [GenBank]

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 65 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,627,344,254
Total ungapped length2,334,866,601
Gaps between scaffolds0
Number of scaffolds3,825
Scaffold N50129,642,644
Scaffold L509
Number of contigs305,391
Contig N5016,196
Contig L5041,477
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)37,453

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_001632535.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM004194.1n/an/a0
Chromosome 2CM004195.1n/an/a0
Chromosome 3CM004196.1n/an/a0
Chromosome 4CM004197.1n/an/a0
Chromosome 5CM004198.1n/an/a0
Chromosome 6CM004199.1n/an/a0
Chromosome 7CM004200.1n/an/a0
Chromosome 8CM004201.1n/an/a0
Chromosome 9CM004202.1n/an/a0
Chromosome 10CM004203.1n/an/a0
Chromosome 11CM004204.1n/an/a0
Chromosome 12CM004205.1n/an/a0
Chromosome 13CM004206.1n/an/a0
Chromosome 14CM004207.1n/an/a0
Chromosome 15CM004208.1n/an/a0
Chromosome 16CM004209.1n/an/a0
Chromosome 17CM004210.1n/an/a0
Chromosome 18CM004211.1n/an/a0
Chromosome 19CM004212.1n/an/a0
Chromosome XCM004213.1n/an/a1
unplacedn/an/an/a3,803

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,627,327,9543,8242,334,850,301129,642,644301,5670
Chromosome 1Assembled molecule194,908,2231177,084,777194,908,22322,7060
Chromosome 2Assembled molecule181,349,6501164,947,705181,349,65019,5570
Chromosome 3Assembled molecule157,965,8321142,702,856157,965,83218,5290
Chromosome 4Assembled molecule154,348,4441135,795,258154,348,44417,2400
Chromosome 5Assembled molecule152,207,3331135,833,408152,207,33318,3540
Chromosome 6Assembled molecule148,363,4161133,788,326148,363,41616,4200
Chromosome 7Assembled molecule146,147,5971121,126,053146,147,59715,3010
Chromosome 8Assembled molecule127,704,5031115,853,454127,704,50313,9480
Chromosome 9Assembled molecule122,684,5791113,498,521122,684,57912,4530
Chromosome 10Assembled molecule129,642,6441117,986,031129,642,64415,0180
Chromosome 11Assembled molecule121,220,7041113,131,542121,220,70412,2490
Chromosome 12Assembled molecule118,936,9221102,793,503118,936,92213,0660
Chromosome 13Assembled molecule118,516,3561105,435,290118,516,35613,3210
Chromosome 14Assembled molecule118,589,5381104,363,396118,589,53813,4680
Chromosome 15Assembled molecule101,776,712193,451,376101,776,71211,3690
Chromosome 16Assembled molecule95,390,300187,936,82395,390,30010,5820
Chromosome 17Assembled molecule95,163,053184,363,66995,163,05311,5690
Chromosome 18Assembled molecule88,174,299181,596,85388,174,2999,0630
Chromosome 19Assembled molecule59,087,868154,347,15459,087,8686,0060
Chromosome XAllAssembled moleculeUnlocalized scaffolds165,639,509165,280,069359,440211127,832,661127,534,573298,088165,280,069165,280,069359,44022,88422,83747000
unplacedAssembled molecule29,510,4723,80320,981,64513,8558,4640
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT16,300116,30016,30000