Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

IpCoco_1.2

This assembly has been replaced. See current version

Organism name:

Ictalurus punctatus (channel catfish)

Infraspecific name:

Breed: USDA103

Sex:

female

BioSample:

SAMN03486842

BioProject:

PRJNA281269

Submitter:

Auburn University

Date:

2019/01/25

Assembly level:

Chromosome

Genome representation:

full

GenBank assembly accession:

GCA_001660625.2 (replaced)

RefSeq assembly accession:

GCF_001660625.2 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

LBML01

Assembly method:

Celera Assembler v. 6.1; MaSuRCA v. 2.2.0

Expected final version:

yes

Reference guided assembly:

GCA_001660625.1

IDs: 7966771 [UID] 21844168 [GenBank] 32222508 [RefSeq]

See Genome Information for Ictalurus punctatus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001660625.3	≠	GCF_001660625.3	Coco_2.0	Chromosome	Latest GenBank, Latest RefSeq
GCA_001660625.2	≠	GCF_001660625.2	IpCoco_1.2	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_001660625.1	≠	GCF_001660625.1	IpCoco_1.2	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

The chrY from the PKUT01 (GCA_004006655.2) genome assembly has been added to this female assembly.

Global statistics

Total sequence length	821,768,289
Total ungapped length	809,962,484
Gaps between scaffolds	634
Number of scaffolds	9,976
Scaffold N50	7,898,905
Scaffold L50	30
Number of contigs	34,627
Contig N50	81,424
Contig L50	2,657
Total number of chromosomes and plasmids	31
Number of component sequences (WGS or clone)	34,545

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM004414.1	=	NC_030416.1	0
Chromosome 2	CM004415.1	=	NC_030417.1	0
Chromosome 3	CM004416.1	=	NC_030418.1	0
Chromosome 5	CM004418.1	=	NC_030420.1	0
Chromosome 6	CM004419.1	=	NC_030421.1	0
Chromosome 7	CM004420.1	=	NC_030422.1	0
Chromosome 8	CM004421.1	=	NC_030423.1	0
Chromosome 9	CM004422.1	=	NC_030424.1	0
Chromosome 10	CM004423.1	=	NC_030425.1	0
Chromosome 11	CM004424.1	=	NC_030426.1	0
Chromosome 12	CM004425.1	=	NC_030427.1	0
Chromosome 13	CM004426.1	=	NC_030428.1	0
Chromosome 14	CM004427.1	=	NC_030429.1	0
Chromosome 15	CM004428.1	=	NC_030430.1	0
Chromosome 16	CM004429.1	=	NC_030431.1	0
Chromosome 17	CM004430.1	=	NC_030432.1	0
Chromosome 18	CM004431.1	=	NC_030433.1	0
Chromosome 19	CM004432.1	=	NC_030434.1	0
Chromosome 20	CM004433.1	=	NC_030435.1	0
Chromosome 21	CM004434.1	=	NC_030436.1	0
Chromosome 22	CM004435.1	=	NC_030437.1	0
Chromosome 23	CM004436.1	=	NC_030438.1	0
Chromosome 24	CM004437.1	=	NC_030439.1	0
Chromosome 25	CM004438.1	=	NC_030440.1	0
Chromosome 26	CM004439.1	=	NC_030441.1	0
Chromosome 27	CM004440.1	=	NC_030442.1	0
Chromosome 28	CM004441.1	=	NC_030443.1	0
Chromosome 29	CM004442.1	=	NC_030444.1	0
Chromosome X	CM004417.1	=	NC_030419.1	0
Chromosome Y	CM014015.1	=	NC_061155.1	0
unplaced	n/a	n/a	n/a	9,311

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	821,751,792	9,975	809,945,987	7,898,905	24,651	634
Chromosome 1	37,510,255	26	37,122,741	4,689,936	1,090	25
Chromosome 2	37,257,225	46	36,720,646	4,538,080	1,267	45
Chromosome 3	35,853,109	36	35,381,860	11,756,430	1,099	35
Chromosome 5	33,351,511	43	32,689,799	4,794,429	1,236	42
Chromosome 6	32,139,338	10	31,862,487	17,399,147	801	9
Chromosome 7	31,027,439	47	30,516,225	17,005,571	982	46
Chromosome 8	30,410,158	20	30,070,012	6,026,562	854	19
Chromosome 9	30,212,908	16	29,775,971	22,613,484	965	15
Chromosome 10	29,046,025	19	28,792,032	3,938,164	703	18
Chromosome 11	28,208,075	12	27,862,182	7,381,553	855	11
Chromosome 12	28,145,556	13	27,840,083	18,156,554	800	12
Chromosome 13	27,425,808	22	27,070,598	18,568,199	795	21
Chromosome 14	26,699,778	31	26,309,136	5,460,050	867	30
Chromosome 15	26,085,978	15	25,803,187	16,226,129	738	14
Chromosome 16	25,964,114	9	25,752,167	13,210,347	645	8
Chromosome 17	25,916,894	30	25,680,275	4,851,066	741	29
Chromosome 18	24,512,808	11	24,317,362	7,726,806	691	10
Chromosome 19	24,127,165	43	23,671,147	13,548,073	796	42
Chromosome 20	22,470,590	18	22,183,167	7,481,065	730	17
Chromosome 21	20,987,006	16	20,701,079	9,029,605	604	15
Chromosome 22	19,874,160	23	19,558,675	10,590,884	703	22
Chromosome 23	19,722,170	5	19,567,959	8,188,245	548	4
Chromosome 24	19,702,765	16	19,479,580	16,210,650	601	15
Chromosome 25	19,457,651	10	19,278,589	13,270,942	496	9
Chromosome 26	19,081,014	28	18,834,769	9,971,740	643	27
Chromosome 27	18,544,414	15	18,293,922	13,240,717	653	14
Chromosome 28	18,419,168	24	18,102,151	4,081,261	710	23
Chromosome 29	15,256,605	20	14,949,712	1,869,310	689	19
Chromosome X	34,595,840	39	34,054,496	4,128,626	1,144	38
Chromosome Y	38,493,568	1	38,069,678	38,493,568	82	0
unplaced	21,252,697	9,311	19,634,300	6,821	1,123	0

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

IpCoco_1.2

See Genome Information for Ictalurus punctatus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear