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KOREF1.0

Organism name:
Homo sapiens (human)
Isolate:
KOREF
Sex:
male
BioSample:
SAMN04018081
BioProject:
PRJNA294231
Submitter:
Genome Research Foundation
Date:
2016/09/20
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_001712695.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LWKW01
Assembly method:
SOAPdenovo v. r240; PBSuite v. 14.9.9
Expected final version:
yes
Genome coverage:
154.7x
Sequencing technology:
Illumina HiSeq; PacBio

IDs: 859411 [UID] 3609868 [GenBank]

See Genome Information for Homo sapiens

Pathogen Detection Resources

There are 1094 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,944,055,311
Total ungapped length2,912,199,265
Gaps between scaffolds4,434
Number of scaffolds68,204
Scaffold N5025,272,253
Scaffold L5037
Number of contigs191,986
Contig N5047,865
Contig L5017,741
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)191,986

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_001712725.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM004593.1n/an/a0
Chromosome 2CM004594.1n/an/a0
Chromosome 3CM004595.1n/an/a0
Chromosome 4CM004596.1n/an/a0
Chromosome 5CM004597.1n/an/a0
Chromosome 6CM004598.1n/an/a0
Chromosome 7CM004599.1n/an/a0
Chromosome 8CM004600.1n/an/a0
Chromosome 9CM004601.1n/an/a0
Chromosome 10CM004602.1n/an/a0
Chromosome 11CM004603.1n/an/a0
Chromosome 12CM004604.1n/an/a0
Chromosome 13CM004605.1n/an/a0
Chromosome 14CM004606.1n/an/a0
Chromosome 15CM004607.1n/an/a0
Chromosome 16CM004608.1n/an/a0
Chromosome 17CM004609.1n/an/a0
Chromosome 18CM004610.1n/an/a0
Chromosome 19CM004611.1n/an/a0
Chromosome 20CM004612.1n/an/a0
Chromosome 21CM004613.1n/an/a0
Chromosome 22CM004614.1n/an/a0
Chromosome XCM004615.1n/an/a0
Chromosome YCM004616.1n/an/a0
unplacedn/an/an/a63,746

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All2,944,055,31168,2042,912,199,26525,272,253123,7824,434
Chromosome 1223,676,554412221,359,38122,070,0218,947411
Chromosome 2237,214,278254234,426,79931,718,0668,426253
Chromosome 3198,542,97432196,908,43966,419,4317,18631
Chromosome 4189,882,13495188,260,13457,128,1276,68994
Chromosome 5176,253,273103174,691,25213,727,6286,264102
Chromosome 6170,596,752112169,351,518101,476,6796,252111
Chromosome 7153,569,944241151,707,07914,071,3646,476240
Chromosome 8143,807,79872142,547,29631,892,6065,31571
Chromosome 9112,280,076377110,861,93429,177,9304,741376
Chromosome 10132,196,495181131,032,59230,918,5635,504180
Chromosome 11133,473,26437132,268,98335,967,2395,32836
Chromosome 12133,591,97635132,437,09840,159,7795,54634
Chromosome 1396,983,3946896,296,50433,967,5923,26867
Chromosome 1488,683,9167087,984,58551,915,2713,41769
Chromosome 1579,096,28643878,211,08616,856,1683,303437
Chromosome 1675,940,72832874,901,44212,363,3273,882327
Chromosome 1779,520,93911278,353,16117,018,6954,219111
Chromosome 1875,755,8304075,068,10526,456,7512,64739
Chromosome 1957,461,4876456,647,5888,738,8373,90563
Chromosome 2062,902,12910162,258,18217,080,9152,736100
Chromosome 2134,202,81458033,860,35533,425,7821,428579
Chromosome 2235,118,15130834,594,83527,012,4582,063307
Chromosome X148,599,448195146,614,1739,255,2026,743194
Chromosome Y17,073,23520316,868,4411,466,9011,194202
unplaced87,631,43663,74684,688,30313,2348,3030