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ASM174695v1

Organism name:
Komagataella phaffii GS115 (budding yeasts)
Infraspecific name:
Culture-collection: ATCC:20864
Infraspecific name:
Strain: GS115
BioSample:
SAMN04311980
BioProject:
PRJNA304976
Submitter:
Massachusetts Institute of Technology
Date:
2016/09/21
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_001746955.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
Assembly method:
HGAP v. 2; Pilon v. 1.8
Genome coverage:
107x; 1498x
Sequencing technology:
PacBio; Illumina HiSeq2000

IDs: 802721 [UID] 3472218 [GenBank]

See Genome Information for Komagataella phaffii

There are 137 assemblies for this organism

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History (Show revision history)

Comment

Missing 3' telomeric region

Global statistics

Total sequence length9,462,757
Total ungapped length9,462,757
Gaps between scaffolds0
Number of scaffolds10
Scaffold N502,396,528
Scaffold L502
Number of contigs10
Contig N502,396,528
Contig L502
Total number of chromosomes and plasmids5
Number of component sequences (WGS or clone)10

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_001746965.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CP014715.1n/an/a0
Chromosome 2CP014716.1n/an/a0
Chromosome 3CP014717.1n/an/a0
Chromosome 4CP014718.1n/an/a0
Plasmid KPn/an/an/a1
unplacedn/an/an/a5

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule9,462,757109,462,7572,396,52800
Chromosome 1Assembled molecule2,887,58712,887,5872,887,58700
Chromosome 2Assembled molecule2,396,52812,396,5282,396,52800
Chromosome 3Assembled molecule2,249,37512,249,3752,249,37500
Chromosome 4Assembled molecule1,831,00411,831,0041,831,00400
Plasmid KPAllAssembled moleculeUnlocalized scaffolds11,426011,42610111,426011,42611,426011,426000000
unplacedAssembled molecule86,837586,83714,70300