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Source database (GenBank or RefSeq) File type

ASM175169v1

Organism name:: Listeria monocytogenes (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: BCW_2370
BioSample:: SAMN03357047
BioProject:: PRJNA203445
Submitter:: University of California at Davis
Date:: 2016/09/30
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_001751695.1 (latest)
RefSeq assembly accession:: GCF_001751695.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: MJSX01
Assembly method:: ABySS v. 1.5.2
Expected final version:: yes
Genome coverage:: 49.0x
Sequencing technology:: Illumina HiSeq

IDs: 806371 [UID] 3484018 [GenBank] 3490328 [RefSeq]

See Genome Information for Listeria monocytogenes

Pathogen Detection Resources

There are 60405 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001751695.1	=	GCF_001751695.1	ASM175169v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Bart C. Weimer, UC Davis.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::09/23/2016 19:59:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,170
CDS (total)::3,112
Genes (coding)::3,079
CDS (coding)::3,079
Genes (RNA)::58
rRNAs::2, 3, 1 (5S, 16S, 23S)
complete rRNAs::2, 3, 1 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::48
ncRNAs::4
Pseudo Genes (total)::33
Pseudo Genes (ambiguous residues)::1 of 33
Pseudo Genes (frameshifted)::12 of 33
Pseudo Genes (incomplete)::19 of 33
Pseudo Genes (internal stop)::5 of 33
Pseudo Genes (multiple problems)::3 of 33
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,106,802
Total ungapped length	3,106,752
Gaps between scaffolds	0
Number of scaffolds	33
Scaffold N50	177,594
Scaffold L50	5
Number of contigs	34
Contig N50	175,820
Contig L50	5
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	33

	ANI	Query coverage	Subject coverage
Declared type	99.36	89.40	93.20
Best-match type	99.36	89.40	93.20

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ASM175169v1

See Genome Information for Listeria monocytogenes

Pathogen Detection Resources

There are 60405 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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