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Source database (GenBank or RefSeq) File type

ASM175182v1

Anomalous assembly.

Organism name:

Listeria monocytogenes (firmicutes)

Taxonomy check:

Inconclusive

Infraspecific name:

Strain: BCW_2376

BioSample:

SAMN03357053

BioProject:

PRJNA203445

Submitter:

University of California at Davis

Date:

2016/09/30

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Assembly anomaly:

unverified source organism

Excluded from RefSeq:

unverified source organism

GenBank assembly accession:

GCA_001751825.1 (latest)

RefSeq assembly accession:

GCF_001751825.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

MJTD01

Assembly method:

ABySS v. 1.5.2

Expected final version:

yes

Genome coverage:

42.0x

Sequencing technology:

Illumina HiSeq

IDs: 806451 [UID] 3484168 [GenBank] 3492288 [RefSeq]

See Genome Information for Listeria monocytogenes

Pathogen Detection Resources

There are 60478 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001751825.1	=	GCF_001751825.1	ASM175182v1	Scaffold	Latest GenBank, RefSeq suppressed

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Bart C. Weimer, UC Davis.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::09/23/2016 21:16:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,846
CDS (total)::2,785
Genes (coding)::2,750
CDS (coding)::2,750
Genes (RNA)::61
rRNAs::3, 1, 3 (5S, 16S, 23S)
complete rRNAs::3, 1, 3 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::50
ncRNAs::4
Pseudo Genes (total)::35
Pseudo Genes (ambiguous residues)::0 of 35
Pseudo Genes (frameshifted)::14 of 35
Pseudo Genes (incomplete)::15 of 35
Pseudo Genes (internal stop)::10 of 35
Pseudo Genes (multiple problems)::4 of 35
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,813,242
Total ungapped length	2,813,192
Gaps between scaffolds	0
Number of scaffolds	21
Scaffold N50	315,611
Scaffold L50	4
Number of contigs	22
Contig N50	315,611
Contig L50	4
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	21

	ANI	Query coverage	Subject coverage
Declared type	88.63	89.55	84.53
Best-match type	98.82	95.36	95.25

Assembly

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Download Assembly

ASM175182v1

See Genome Information for Listeria monocytogenes

Pathogen Detection Resources

There are 60478 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

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