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ASM176172v1

Organism name:: Campylobacter jejuni (e-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: BCW_3799
BioSample:: SAMN03359156
BioProject:: PRJNA203445
Submitter:: University of California at Davis
Date:: 2016/10/04
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_001761725.1 (latest)
RefSeq assembly accession:: GCF_001761725.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: MJVO01
Assembly method:: ABySS v. 1.5.2
Expected final version:: yes
Genome coverage:: 150.0x
Sequencing technology:: Illumina HiSeq

IDs: 813701 [UID] 3509368 [GenBank] 3514348 [RefSeq]

See Genome Information for Campylobacter jejuni

Pathogen Detection Resources

There are 78886 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001761725.1	=	GCF_001761725.1	ASM176172v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Weimer lab.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::09/26/2016 13:56:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,855
CDS (total)::1,795
Genes (coding)::1,685
CDS (coding)::1,685
Genes (RNA)::60
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::110
Pseudo Genes (ambiguous residues)::4 of 110
Pseudo Genes (frameshifted)::46 of 110
Pseudo Genes (incomplete)::62 of 110
Pseudo Genes (internal stop)::19 of 110
Pseudo Genes (multiple problems)::17 of 110
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,768,431
Total ungapped length	1,767,696
Gaps between scaffolds	0
Number of scaffolds	55
Scaffold N50	156,023
Scaffold L50	5
Number of contigs	68
Contig N50	156,023
Contig L50	5
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	55

	ANI	Query coverage	Subject coverage
Declared type	97.17	85.48	88.24
Best-match type	97.17	85.48	88.24

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ASM176172v1

See Genome Information for Campylobacter jejuni

Pathogen Detection Resources

There are 78886 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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