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BCW_4459

Organism name:
Campylobacter jejuni (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BCW_4459
BioSample:
SAMN03358126
BioProject:
PRJNA203445
Submitter:
University of California at Davis
Date:
2016/10/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001762255.1 (latest)
RefSeq assembly accession:
GCF_001762255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MJWN01
Assembly method:
ABySS v. 1.5.2
Expected final version:
yes
Genome coverage:
94.0x
Sequencing technology:
Illumina HiSeq

IDs: 813971 [UID] 3509908 [GenBank] 3516688 [RefSeq]

See Genome Information for Campylobacter jejuni

There are 78985 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Weimer lab.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/26/2016 14:04:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,066
CDS (total)::2,001
Genes (coding)::1,863
CDS (coding)::1,863
Genes (RNA)::65
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
partial rRNAs::
tRNAs::50
ncRNAs::3
Pseudo Genes (total)::138
Pseudo Genes (ambiguous residues)::1 of 138
Pseudo Genes (frameshifted)::87 of 138
Pseudo Genes (incomplete)::50 of 138
Pseudo Genes (internal stop)::21 of 138
Pseudo Genes (multiple problems)::21 of 138
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,942,729
Total ungapped length1,942,505
Gaps between scaffolds0
Number of scaffolds55
Scaffold N50132,584
Scaffold L506
Number of contigs57
Contig N50132,584
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)55

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,942,729551,942,505132,58420

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter jejuniCampylobacter jejuni

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000254515.2Campylobacter jejuni subsp. jejuni ATCC 33560type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000254515.2Campylobacter jejunitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3585.6097.09
Best-match type99.3585.6097.09

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna