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ASM176230v1

Organism name:
Campylobacter jejuni (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BCW_3786
BioSample:
SAMN03359143
BioProject:
PRJNA203445
Submitter:
University of California at Davis
Date:
2016/10/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001762305.1 (latest)
RefSeq assembly accession:
GCF_001762305.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MJWP01
Assembly method:
ABySS v. 1.5.2
Expected final version:
yes
Genome coverage:
111.0x
Sequencing technology:
Illumina HiSeq

IDs: 813991 [UID] 3509948 [GenBank] 3516568 [RefSeq]

See Genome Information for Campylobacter jejuni

There are 78874 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Weimer lab.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/26/2016 14:06:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,921
CDS (total)::1,856
Genes (coding)::1,729
CDS (coding)::1,729
Genes (RNA)::65
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 2, 4 (5S, 16S, 23S)
partial rRNAs::2 (16S)
tRNAs::50
ncRNAs::3
Pseudo Genes (total)::127
Pseudo Genes (ambiguous residues)::1 of 127
Pseudo Genes (frameshifted)::59 of 127
Pseudo Genes (incomplete)::73 of 127
Pseudo Genes (internal stop)::20 of 127
Pseudo Genes (multiple problems)::23 of 127
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,808,881
Total ungapped length1,808,781
Gaps between scaffolds0
Number of scaffolds76
Scaffold N50106,237
Scaffold L507
Number of contigs78
Contig N50106,237
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)76

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,808,881761,808,781106,23720

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter jejuniCampylobacter jejuni

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000254515.2Campylobacter jejuni subsp. jejuni ATCC 33560type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000254515.2Campylobacter jejunitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.1683.0587.72
Best-match type97.1683.0587.72

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna