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ASM176237v1

Organism name:
Campylobacter sp. BCW_6874 (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BCW_6874
BioSample:
SAMN03360221
BioProject:
PRJNA203445
Submitter:
University of California at Davis
Date:
2016/10/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001762375.1 (latest)
RefSeq assembly accession:
GCF_001762375.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MJWT01
Assembly method:
ABySS v. 1.5.2
Expected final version:
yes
Genome coverage:
130.0x
Sequencing technology:
Illumina HiSeq

IDs: 814031 [UID] 3510028 [GenBank] 3517388 [RefSeq]

See Genome Information for Campylobacter sp. BCW_6874

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Weimer lab.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/26/2016 14:07:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,986
CDS (total)::1,926
Genes (coding)::1,768
CDS (coding)::1,768
Genes (RNA)::60
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 1, 4 (5S, 16S, 23S)
partial rRNAs::3 (16S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::158
Pseudo Genes (ambiguous residues)::10 of 158
Pseudo Genes (frameshifted)::54 of 158
Pseudo Genes (incomplete)::102 of 158
Pseudo Genes (internal stop)::21 of 158
Pseudo Genes (multiple problems)::23 of 158
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,864,348
Total ungapped length1,861,600
Gaps between scaffolds0
Number of scaffolds116
Scaffold N50117,470
Scaffold L505
Number of contigs144
Contig N5093,514
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)116

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,864,3481161,861,600117,470280

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter sp. BCW_6874Campylobacter sp. BCW_6874

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000254515.2Campylobacter jejunitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.1580.1287.10

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna