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ASM176242v1

Organism name:
Campylobacter sp. BCW_6876 (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BCW_6876
BioSample:
SAMN03360223
BioProject:
PRJNA203445
Submitter:
University of California at Davis
Date:
2016/10/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • many frameshifted proteins
GenBank assembly accession:
GCA_001762425.1 (latest)
RefSeq assembly accession:
GCF_001762425.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MJWV01
Assembly method:
ABySS v. 1.5.2
Expected final version:
yes
Genome coverage:
165.0x
Sequencing technology:
Illumina HiSeq

IDs: 814051 [UID] 3510068 [GenBank] 4399168 [RefSeq]

See Genome Information for Campylobacter sp. BCW_6876

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Weimer lab.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/26/2016 14:05:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,920
CDS (total)::1,855
Genes (coding)::1,695
CDS (coding)::1,695
Genes (RNA)::65
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
partial rRNAs::
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::160
Pseudo Genes (ambiguous residues)::0 of 160
Pseudo Genes (frameshifted)::125 of 160
Pseudo Genes (incomplete)::49 of 160
Pseudo Genes (internal stop)::52 of 160
Pseudo Genes (multiple problems)::59 of 160
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,798,356
Total ungapped length1,798,306
Gaps between scaffolds0
Number of scaffolds39
Scaffold N5094,153
Scaffold L506
Number of contigs40
Contig N5094,153
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)39

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,798,356391,798,30694,15310

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter sp. BCW_6876Campylobacter sp. BCW_6876

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000251165.2Campylobacter jejunitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.7380.5583.63

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna