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Source database (GenBank or RefSeq) File type

ASM176244v1

Organism name:: Campylobacter sp. BCW_6877 (e-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: BCW_6877
BioSample:: SAMN03360224
BioProject:: PRJNA203445
Submitter:: University of California at Davis
Date:: 2016/10/04
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_001762445.1 (latest)
RefSeq assembly accession:: GCF_001762445.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: MJWW01
Assembly method:: ABySS v. 1.5.2
Expected final version:: yes
Genome coverage:: 123.0x
Sequencing technology:: Illumina HiSeq

IDs: 814061 [UID] 3510088 [GenBank] 3517088 [RefSeq]

See Genome Information for Campylobacter sp. BCW_6877

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001762445.1	=	GCF_001762445.1	ASM176244v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Weimer lab.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::09/26/2016 14:05:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,961
CDS (total)::1,911
Genes (coding)::1,791
CDS (coding)::1,791
Genes (RNA)::50
rRNAs::4, 1, 4 (5S, 16S, 23S)
complete rRNAs::4, 1, 4 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::38
ncRNAs::3
Pseudo Genes (total)::120
Pseudo Genes (ambiguous residues)::3 of 120
Pseudo Genes (frameshifted)::51 of 120
Pseudo Genes (incomplete)::66 of 120
Pseudo Genes (internal stop)::19 of 120
Pseudo Genes (multiple problems)::16 of 120
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,866,607
Total ungapped length	1,866,132
Gaps between scaffolds	0
Number of scaffolds	65
Scaffold N50	107,569
Scaffold L50	6
Number of contigs	72
Contig N50	107,569
Contig L50	7
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	65

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	97.11	81.26	87.54

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ASM176244v1

See Genome Information for Campylobacter sp. BCW_6877

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

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