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ASM176347v1

Organism name:
Campylobacter jejuni (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BCW_6886
BioSample:
SAMN04532393
BioProject:
PRJNA203445
Submitter:
University of California at Davis
Date:
2016/10/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001763475.1 (latest)
RefSeq assembly accession:
GCF_001763475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MJYU01
Assembly method:
ABySS v. 1.5.2
Expected final version:
yes
Genome coverage:
80.0x
Sequencing technology:
Illumina HiSeq

IDs: 814561 [UID] 3511088 [GenBank] 3519088 [RefSeq]

See Genome Information for Campylobacter jejuni

There are 78936 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Weimer lab.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/26/2016 15:16:49
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,836
CDS (total)::1,796
Genes (coding)::1,652
CDS (coding)::1,652
Genes (RNA)::40
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::34
ncRNAs::3
Pseudo Genes (total)::144
Pseudo Genes (ambiguous residues)::0 of 144
Pseudo Genes (frameshifted)::52 of 144
Pseudo Genes (incomplete)::91 of 144
Pseudo Genes (internal stop)::19 of 144
Pseudo Genes (multiple problems)::15 of 144
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,729,127
Total ungapped length1,729,127
Number of contigs114
Contig N5061,365
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)114

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,729,1271141,729,12761,36500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter jejuniCampylobacter jejuni

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000254515.2Campylobacter jejuni subsp. jejuni ATCC 33560type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000254515.2Campylobacter jejunitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.3186.2087.04
Best-match type97.3186.2087.04

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna