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ASM176380v1

Organism name:
Campylobacter coli (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BCW_6950
BioSample:
SAMN04532427
BioProject:
PRJNA203445
Submitter:
University of California at Davis
Date:
2016/10/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001763805.1 (latest)
RefSeq assembly accession:
GCF_001763805.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MJZL01
Assembly method:
ABySS v. 1.5.2
Expected final version:
yes
Genome coverage:
76.0x
Sequencing technology:
Illumina HiSeq

IDs: 814731 [UID] 3511428 [GenBank] 3519368 [RefSeq]

See Genome Information for Campylobacter coli

There are 32177 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Weimer lab.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/26/2016 16:06:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,827
CDS (total)::1,766
Genes (coding)::1,720
CDS (coding)::1,720
Genes (RNA)::61
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
partial rRNAs::
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::46
Pseudo Genes (ambiguous residues)::0 of 46
Pseudo Genes (frameshifted)::18 of 46
Pseudo Genes (incomplete)::24 of 46
Pseudo Genes (internal stop)::6 of 46
Pseudo Genes (multiple problems)::2 of 46
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,740,481
Total ungapped length1,740,481
Number of contigs34
Contig N50141,915
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)34

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,740,481341,740,481141,91500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter coliCampylobacter coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900446355.1Campylobacter colitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900446355.1Campylobacter colitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5994.6985.01
Best-match type98.5994.6985.01

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna