U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM176456v1

  • Anomalous assembly.
Organism name:
Corynebacterium sp. BCW_4722 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BCW_4722
BioSample:
SAMN04532245
BioProject:
PRJNA203445
Submitter:
University of California at Davis
Date:
2016/10/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_001764565.1 (latest)
RefSeq assembly accession:
GCF_001764565.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MKAX01
Assembly method:
ABySS v. 1.5.2
Expected final version:
yes
Genome coverage:
84.0x
Sequencing technology:
Illumina HiSeq

IDs: 815131 [UID] 3512228 [GenBank] 3955098 [RefSeq]

See Genome Information for Corynebacterium sp. BCW_4722

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Weimer lab.

The organism name was changed to Corynebacterium sp. BCW_4722 in August 2018 ... because ANI and BLAST analysis indicated that it was a Corynebacterium, not Campylobacter concisus  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/26/2016 17:16:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,361
CDS (total)::2,299
Genes (coding)::2,087
CDS (coding)::2,087
Genes (RNA)::62
rRNAs::1, 5, 8 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::4, 8 (16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::212
Pseudo Genes (ambiguous residues)::0 of 212
Pseudo Genes (frameshifted)::9 of 212
Pseudo Genes (incomplete)::202 of 212
Pseudo Genes (internal stop)::3 of 212
Pseudo Genes (multiple problems)::2 of 212
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,612,454
Total ungapped length2,612,454
Number of contigs954
Contig N5066,477
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)954

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,612,4549542,612,45466,47700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Corynebacterium sp. BCW_4722Corynebacterium sp. BCW_4722

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014490595.1Corynebacterium wankangliniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.9422.3529.22

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna