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ASM176501v1

Organism name:
Campylobacter jejuni (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BCW_5125
BioSample:
SAMN04532267
BioProject:
PRJNA203445
Submitter:
University of California at Davis
Date:
2016/10/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001765015.1 (latest)
RefSeq assembly accession:
GCF_001765015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MKBT01
Assembly method:
ABySS v. 1.5.2
Expected final version:
yes
Genome coverage:
74.0x
Sequencing technology:
Illumina HiSeq

IDs: 815331 [UID] 3512628 [GenBank] 3520298 [RefSeq]

See Genome Information for Campylobacter jejuni

There are 78985 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Weimer lab.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/26/2016 17:10:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,873
CDS (total)::1,808
Genes (coding)::1,725
CDS (coding)::1,725
Genes (RNA)::65
rRNAs::4, 4, 7 (5S, 16S, 23S)
complete rRNAs::4, 4, 1 (5S, 16S, 23S)
partial rRNAs::6 (23S)
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::83
Pseudo Genes (ambiguous residues)::1 of 83
Pseudo Genes (frameshifted)::39 of 83
Pseudo Genes (incomplete)::41 of 83
Pseudo Genes (internal stop)::9 of 83
Pseudo Genes (multiple problems)::6 of 83
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,774,518
Total ungapped length1,774,418
Gaps between scaffolds0
Number of scaffolds49
Scaffold N50152,537
Scaffold L505
Number of contigs51
Contig N50152,537
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)49

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,774,518491,774,418152,53720

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter jejuniCampylobacter jejuni

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000254515.2Campylobacter jejuni subsp. jejuni ATCC 33560type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000254515.2Campylobacter jejunitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7887.5790.74
Best-match type97.7887.5790.74

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna