U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM176512v1

Organism name:
Campylobacter jejuni (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BCW_5133
BioSample:
SAMN04532273
BioProject:
PRJNA203445
Submitter:
University of California at Davis
Date:
2016/10/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001765125.1 (latest)
RefSeq assembly accession:
GCF_001765125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MKBZ01
Assembly method:
ABySS v. 1.5.2
Expected final version:
yes
Genome coverage:
79.0x
Sequencing technology:
Illumina HiSeq

IDs: 815391 [UID] 3512748 [GenBank] 3519988 [RefSeq]

See Genome Information for Campylobacter jejuni

There are 78985 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Weimer lab.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/26/2016 17:16:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,029
CDS (total)::1,987
Genes (coding)::1,854
CDS (coding)::1,854
Genes (RNA)::42
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
partial rRNAs::
tRNAs::37
ncRNAs::3
Pseudo Genes (total)::133
Pseudo Genes (ambiguous residues)::0 of 133
Pseudo Genes (frameshifted)::45 of 133
Pseudo Genes (incomplete)::87 of 133
Pseudo Genes (internal stop)::15 of 133
Pseudo Genes (multiple problems)::14 of 133
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,858,971
Total ungapped length1,858,971
Number of contigs140
Contig N50115,025
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)140

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,858,9711401,858,971115,02500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter jejuniCampylobacter jejuni

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_008802045.1Campylobacter jejuni subsp. jejunitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008802045.1Campylobacter jejunitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7085.5191.13
Best-match type97.7085.5191.13

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna