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ASM176929v1

Organism name:
Bacteroidetes bacterium GWF2_49_14 (CFB group bacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN04313843
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/10/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001769295.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MEOR01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 817551 [UID] 3525288 [GenBank]

See Genome Information for Bacteroidetes bacterium GWF2_49_14

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/06/2016 17:05:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,901
CDS (total)::2,862
Genes (coding)::2,622
CDS (coding)::2,622
Genes (RNA)::39
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::33
ncRNAs::3
Pseudo Genes (total)::240
Pseudo Genes (ambiguous residues)::65 of 240
Pseudo Genes (frameshifted)::3 of 240
Pseudo Genes (incomplete)::176 of 240
Pseudo Genes (internal stop)::4 of 240
Pseudo Genes (multiple problems)::8 of 240
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,521,784
Total ungapped length3,513,463
Gaps between scaffolds0
Number of scaffolds163
Scaffold N5031,279
Scaffold L5032
Number of contigs304
Contig N5022,337
Contig L5045
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)163

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,521,7841633,513,46331,2791410

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroidetes bacterium GWF2_49_14Bacteroidetes bacterium GWF2_49_14

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009689585.1Aquipluma nitroreducenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.020.060.04

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena