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Source database (GenBank or RefSeq) File type

ASM178853v1

Organism name:

Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_69_21 (bacteria)

Taxonomy check:

Inconclusive

BioSample:

SAMN04315885

BioProject:

PRJNA288027

Submitter:

Banfield Lab, University of California, Berkeley

Date:

2016/10/19

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
fragmented assembly
genus undefined

GenBank assembly accession:

GCA_001788535.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

MGCG01

Assembly method:

IDBA_UD v. 06.01.2014s

Genome coverage:

10x

Sequencing technology:

Illumina HiSeq2000

IDs: 827181 [UID] 3544608 [GenBank]

See Genome Information for Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_69_21

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001788535.1	n/a	n/a	ASM178853v1	Scaffold	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::09/08/2016 00:12:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,218
CDS (total)::3,179
Genes (coding)::2,303
CDS (coding)::2,303
Genes (RNA)::39
rRNAs::1, 1 (5S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1 (23S)
tRNAs::35
ncRNAs::2
Pseudo Genes (total)::876
Pseudo Genes (ambiguous residues)::180 of 876
Pseudo Genes (frameshifted)::19 of 876
Pseudo Genes (incomplete)::733 of 876
Pseudo Genes (internal stop)::11 of 876
Pseudo Genes (multiple problems)::67 of 876
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,808,976
Total ungapped length	2,782,868
Gaps between scaffolds	0
Number of scaffolds	756
Scaffold N50	4,809
Scaffold L50	179
Number of contigs	1,189
Contig N50	3,834
Contig L50	215
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	756

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	81.69	0.01	0.01

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ASM178853v1

See Genome Information for Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_69_21

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Global assembly definition

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result