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ASM180083v1

Organism name:
Firmicutes bacterium GWE2_51_13 (firmicutes)
Taxonomy check:
Inconclusive
BioSample:
SAMN04313940
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/10/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001800835.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MGWE01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 833341 [UID] 3557348 [GenBank]

See Genome Information for Firmicutes bacterium GWE2_51_13

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/08/2016 12:00:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,266
CDS (total)::2,221
Genes (coding)::2,168
CDS (coding)::2,168
Genes (RNA)::45
rRNAs::2, 1 (5S, 16S)
complete rRNAs::1 (5S)
partial rRNAs::1, 1 (5S, 16S)
tRNAs::39
ncRNAs::3
Pseudo Genes (total)::53
Pseudo Genes (ambiguous residues)::21 of 53
Pseudo Genes (frameshifted)::3 of 53
Pseudo Genes (incomplete)::33 of 53
Pseudo Genes (internal stop)::0 of 53
Pseudo Genes (multiple problems)::4 of 53
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,223,560
Total ungapped length2,221,352
Gaps between scaffolds0
Number of scaffolds30
Scaffold N50123,794
Scaffold L508
Number of contigs66
Contig N5076,009
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)30

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,223,560302,221,352123,794360

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Firmicutes bacterium GWE2_51_13Firmicutes bacterium GWE2_51_13

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000157995.1Holdemania filiformistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.970.060.04

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena