Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM181844v1

Organism name:

Candidatus Komeilibacteria bacterium RIFOXYC1_FULL_37_11 (bacteria)

Taxonomy check:

Inconclusive

BioSample:

SAMN04314527

BioProject:

PRJNA288027

Submitter:

Banfield Lab, University of California, Berkeley

Date:

2016/10/21

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
genus undefined

GenBank assembly accession:

GCA_001818445.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

MHKQ01

Assembly method:

IDBA_UD v. 06.01.2014s

Genome coverage:

10x

Sequencing technology:

Illumina HiSeq2000

IDs: 842131 [UID] 3575188 [GenBank]

See Genome Information for Candidatus Komeilibacteria bacterium RIFOXYC1_FULL_37_11

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001818445.1	n/a	n/a	ASM181844v1	Scaffold	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::09/08/2016 18:21:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::921
CDS (total)::877
Genes (coding)::837
CDS (coding)::837
Genes (RNA)::44
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::39
ncRNAs::2
Pseudo Genes (total)::40
Pseudo Genes (ambiguous residues)::14 of 40
Pseudo Genes (frameshifted)::2 of 40
Pseudo Genes (incomplete)::28 of 40
Pseudo Genes (internal stop)::0 of 40
Pseudo Genes (multiple problems)::4 of 40
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	904,089
Total ungapped length	902,318
Gaps between scaffolds	0
Number of scaffolds	26
Scaffold N50	44,182
Scaffold L50	7
Number of contigs	57
Contig N50	34,300
Contig L50	10
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	26

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	77.00	0.10	0.03

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM181844v1

See Genome Information for Candidatus Komeilibacteria bacterium RIFOXYC1_FULL_37_11

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result