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Source database (GenBank or RefSeq) File type

ASM182573v1

Anomalous assembly.

Organism name:

Listeria monocytogenes (firmicutes)

Taxonomy check:

Failed

Infraspecific name:

Strain: BCW_2997

BioSample:

SAMN03358733

BioProject:

PRJNA203445

Submitter:

University of California at Davis

Date:

2016/09/29

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Assembly anomaly:

unverified source organism

Excluded from RefSeq:

unverified source organism

GenBank assembly accession:

GCA_001825735.1 (latest)

RefSeq assembly accession:

GCF_001825735.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

MJNE01

Assembly method:

ABySS v. 1.5.2

Expected final version:

yes

Genome coverage:

92.0x

Sequencing technology:

Illumina HiSeq

IDs: 845771 [UID] 3582478 [GenBank] 3621268 [RefSeq]

See Genome Information for Listeria monocytogenes

Pathogen Detection Resources

There are 60478 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001825735.1	=	GCF_001825735.1	ASM182573v1	Scaffold	Latest GenBank, RefSeq suppressed

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Bart C. Weimer, UC Davis.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::09/23/2016 12:45:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,878
CDS (total)::2,807
Genes (coding)::2,768
CDS (coding)::2,768
Genes (RNA)::71
rRNAs::2, 4, 2 (5S, 16S, 23S)
complete rRNAs::2, 4, 2 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::39
Pseudo Genes (ambiguous residues)::0 of 39
Pseudo Genes (frameshifted)::16 of 39
Pseudo Genes (incomplete)::14 of 39
Pseudo Genes (internal stop)::9 of 39
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,857,564
Total ungapped length	2,857,414
Gaps between scaffolds	0
Number of scaffolds	17
Scaffold N50	548,140
Scaffold L50	2
Number of contigs	20
Contig N50	406,079
Contig L50	2
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	17

	ANI	Query coverage	Subject coverage
Declared type	88.54	88.85	85.18
Best-match type	98.36	93.57	93.57

Assembly

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Download Assembly

ASM182573v1

See Genome Information for Listeria monocytogenes

Pathogen Detection Resources

There are 60478 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result