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ASM182841v1

Organism name:
Planctomycetes bacterium RIFCSPHIGHO2_02_FULL_52_58 (bacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN04315542
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/10/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001828415.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MHYS01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 847111 [UID] 3585168 [GenBank]

See Genome Information for Planctomycetes bacterium RIFCSPHIGHO2_02_FULL_52_58

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/08/2016 22:27:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,268
CDS (total)::1,247
Genes (coding)::1,117
CDS (coding)::1,117
Genes (RNA)::21
rRNAs::
complete rRNAs::
partial rRNAs::
tRNAs::18
ncRNAs::3
Pseudo Genes (total)::130
Pseudo Genes (ambiguous residues)::11 of 130
Pseudo Genes (frameshifted)::6 of 130
Pseudo Genes (incomplete)::115 of 130
Pseudo Genes (internal stop)::2 of 130
Pseudo Genes (multiple problems)::4 of 130
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,249,585
Total ungapped length1,248,922
Gaps between scaffolds0
Number of scaffolds135
Scaffold N509,995
Scaffold L5044
Number of contigs157
Contig N509,212
Contig L5046
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)135

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,249,5851351,248,9229,995220

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Planctomycetes bacterium RIFCSPHIGHO2_02_FULL_52_58Planctomycetes bacterium RIFCSPHIGHO2_02_FULL_52_58

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010499435.1Dissulfurirhabdus thermomarinatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.180.010.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena