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ASM198997v1

Organism name:
Leishmania donovani (kinetoplastids)
Infraspecific name:
Strain: MHOM/IN/1983/AG83
Isolate:
early passage
BioSample:
SAMN04145217
BioProject:
PRJNA297706
Submitter:
Indian Institute Of Chemical biology
Date:
2017/02/07
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_001989975.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
Assembly method:
AllPaths v. Sep-2015
Expected final version:
yes
Reference guided assembly:
Leishmania donovani BPK282A1
Genome coverage:
140.0x
Sequencing technology:
Illumina HiSeq

IDs: 1000181 [UID] 4101358 [GenBank]

See Genome Information for Leishmania donovani

There are 12 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length32,196,393
Total ungapped length28,533,355
Gaps between scaffolds0
Number of scaffolds36
Scaffold N501,029,368
Scaffold L5011
Number of contigs2,172
Contig N5020,549
Contig L50426
Total number of chromosomes and plasmids36
Number of component sequences (WGS or clone)36

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_001989985.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP018586.1n/an/a
Chromosome 2CP018597.1n/an/a
Chromosome 3CP018605.1n/an/a
Chromosome 4CP018606.1n/an/a
Chromosome 5CP018607.1n/an/a
Chromosome 6CP018608.1n/an/a
Chromosome 7CP018609.1n/an/a
Chromosome 8CP018610.1n/an/a
Chromosome 9CP018611.1n/an/a
Chromosome 10CP018576.1n/an/a
Chromosome 11CP018577.1n/an/a
Chromosome 12CP018578.1n/an/a
Chromosome 13CP018579.1n/an/a
Chromosome 14CP018580.1n/an/a
Chromosome 15CP018581.1n/an/a
Chromosome 16CP018582.1n/an/a
Chromosome 17CP018583.1n/an/a
Chromosome 18CP018584.1n/an/a
Chromosome 19CP018585.1n/an/a
Chromosome 20CP018587.1n/an/a
Chromosome 21CP018588.1n/an/a
Chromosome 22CP018589.1n/an/a
Chromosome 23CP018590.1n/an/a
Chromosome 24CP018591.1n/an/a
Chromosome 25CP018592.1n/an/a
Chromosome 26CP018593.1n/an/a
Chromosome 27CP018594.1n/an/a
Chromosome 28CP018595.1n/an/a
Chromosome 29CP018596.1n/an/a
Chromosome 30CP018598.1n/an/a
Chromosome 31CP018599.1n/an/a
Chromosome 32CP018600.1n/an/a
Chromosome 33CP018601.1n/an/a
Chromosome 34CP018602.1n/an/a
Chromosome 35CP018603.1n/an/a
Chromosome 36CP018604.1n/an/a

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All32,196,3933628,533,3551,029,3682,1360
Chromosome 1284,2641234,826284,264300
Chromosome 2318,9151250,451318,915310
Chromosome 3389,5861370,093389,586220
Chromosome 4475,2801422,746475,280340
Chromosome 5448,8201404,111448,820390
Chromosome 6516,8191466,083516,819410
Chromosome 7603,6811531,559603,681420
Chromosome 8502,7181410,991502,718320
Chromosome 9594,3731524,961594,373350
Chromosome 10554,4231486,634554,423380
Chromosome 11578,0311490,446578,031430
Chromosome 12569,3831476,330569,383230
Chromosome 13650,1821599,083650,182370
Chromosome 14636,4491549,306636,449460
Chromosome 15618,2881521,185618,288470
Chromosome 16698,2381620,015698,238480
Chromosome 17666,4751595,843666,475390
Chromosome 18730,2581651,453730,258590
Chromosome 19695,6311586,863695,631540
Chromosome 20751,3611678,814751,361490
Chromosome 21759,6061704,495759,606420
Chromosome 22658,7551582,159658,755370
Chromosome 23781,7891698,369781,789540
Chromosome 24876,9431781,740876,943540
Chromosome 25879,8121822,264879,812480
Chromosome 261,058,0811979,5261,058,081640
Chromosome 271,029,3681878,5291,029,368740
Chromosome 281,168,59711,089,7731,168,597640
Chromosome 291,239,12711,113,0141,239,127870
Chromosome 301,374,78411,245,5511,374,784760
Chromosome 311,505,91011,114,4071,505,9101550
Chromosome 321,559,74311,459,3061,559,743880
Chromosome 331,453,46411,330,6141,453,4641000
Chromosome 341,735,44811,525,5231,735,4481140
Chromosome 352,087,79211,842,5312,087,7921390
Chromosome 362,743,99912,493,7612,743,9991510