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ASM203279v1

Organism name:
Salmonella enterica subsp. enterica serovar Typhimurium var. 5- (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: N27403
BioSample:
SAMN02367929
BioProject:
PRJNA203445
Submitter:
University of California at Davis
Date:
2017/03/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • annotation fails completeness check
GenBank assembly accession:
GCA_002032795.1 (latest)
RefSeq assembly accession:
GCF_002032795.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MXHB01
Assembly method:
SPAdes v. 3.9.0
Expected final version:
yes
Genome coverage:
99x
Sequencing technology:
Illumina HiSeq

IDs: 1034231 [UID] 4223238 [GenBank] 4248228 [RefSeq]

See Genome Information for Salmonella enterica

There are 525275 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria available from Dr. Bart C. Weimer.

Global statistics

Total sequence length4,661,670
Total ungapped length4,661,670
Number of contigs684
Contig N50177,318
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)684

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,661,6706844,661,670177,31800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar Typhimurium var. 5-Salmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_008692755.1Salmonella enterica subsp. houtenaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008692755.1Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.6390.2690.83
Best-match type96.6390.2690.83

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna