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ASM203432v1

Organism name:
Salmonella enterica (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BCW_1600
BioSample:
SAMN03356964
BioProject:
PRJNA203445
Submitter:
University of California at Davis
Date:
2017/03/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • genome length too large
GenBank assembly accession:
GCA_002034325.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MXMT01
Assembly method:
SPAdes v. 3.9.0
Expected final version:
yes
Genome coverage:
81x
Sequencing technology:
Illumina HiSeq

IDs: 1035011 [UID] 4224818 [GenBank]

See Genome Information for Salmonella enterica

There are 526033 assemblies for this organism

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History (Show revision history)

Comment

Bacteria available from Dr. Bart C. Weimer.

Global statistics

Total sequence length5,555,004
Total ungapped length5,555,004
Number of contigs115
Contig N50158,318
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)115

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,555,0041155,555,004158,31800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella entericaSalmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_008692785.1Salmonella enterica subsp. diarizonaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008692785.1Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5481.0091.28
Best-match type99.5481.0091.28

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna