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ASM203496v1

Organism name:
Salmonella enterica subsp. enterica serovar 4,[5],12:i:- (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BCW_1581
BioSample:
SAMN02367620
BioProject:
PRJNA203445
Submitter:
University of California at Davis
Date:
2017/03/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002034965.1 (latest)
RefSeq assembly accession:
GCF_002034965.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MXNJ01
Assembly method:
SPAdes v. 3.9.0
Expected final version:
yes
Genome coverage:
181x
Sequencing technology:
Illumina HiSeq

IDs: 1035321 [UID] 4225438 [GenBank] 4245488 [RefSeq]

See Genome Information for Salmonella enterica

There are 525275 assemblies for this organism

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History (Show revision history)

Comment

Bacteria available from Dr. Bart C. Weimer.

Global statistics

Total sequence length5,071,921
Total ungapped length5,071,921
Number of contigs90
Contig N50139,437
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)90

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,071,921905,071,921139,43700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar 4,[5],12:i:-Salmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000006945.2Salmonella enterica subsp. enterica serovar Typhimurium str. LT2type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000006945.2Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9394.5296.82
Best-match type99.9394.5296.82

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna