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ASM225470v1

Organism name:
Candidatus Woesearchaeota archaeon ex4484_78 (archaea)
Taxonomy check:
Inconclusive
Isolate:
ex4484_78
BioSample:
SAMN06647977
BioProject:
PRJNA362212
Submitter:
The University of Texas at Austin
Date:
2017/08/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002254705.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
NJDL01
Assembly method:
IDBA v. v1.0.9
Expected final version:
yes
Genome coverage:
17x
Sequencing technology:
Illumina HiSeq

IDs: 1172811 [UID] 4930188 [GenBank]

See Genome Information for Candidatus Woesearchaeota archaeon ex4484_78

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/21/2017 08:59:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::947
CDS (total)::918
Genes (coding)::899
CDS (coding)::899
Genes (RNA)::29
rRNAs::
complete rRNAs::
partial rRNAs::
tRNAs::26
ncRNAs::3
Pseudo Genes (total)::19
Pseudo Genes (ambiguous residues)::0 of 19
Pseudo Genes (frameshifted)::13 of 19
Pseudo Genes (incomplete)::4 of 19
Pseudo Genes (internal stop)::3 of 19
Pseudo Genes (multiple problems)::1 of 19
##Genome-Annotation-Data-END##

Global statistics

Total sequence length807,948
Total ungapped length807,948
Number of contigs72
Contig N5013,059
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)72

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced807,94872807,94813,05900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Woesearchaeota archaeon ex4484_78Candidatus Woesearchaeota archaeon ex4484_78

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana