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ASM225489v1

Organism name:
Thermoprotei archaeon ex4572_64 (crenarchaeotes)
Taxonomy check:
Inconclusive
Isolate:
ex4572_64
BioSample:
SAMN06647986
BioProject:
PRJNA362212
Submitter:
The University of Texas at Austin
Date:
2017/08/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002254895.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
NJDF01
Assembly method:
IDBA v. v1.0.9
Expected final version:
yes
Genome coverage:
105x
Sequencing technology:
Illumina HiSeq

IDs: 1172911 [UID] 4930388 [GenBank]

See Genome Information for Thermoprotei archaeon ex4572_64

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/21/2017 09:00:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::819
CDS (total)::803
Genes (coding)::764
CDS (coding)::764
Genes (RNA)::16
rRNAs::1 (16S)
complete rRNAs::
partial rRNAs::1 (16S)
tRNAs::15
ncRNAs::0
Pseudo Genes (total)::39
Pseudo Genes (ambiguous residues)::4 of 39
Pseudo Genes (frameshifted)::26 of 39
Pseudo Genes (incomplete)::8 of 39
Pseudo Genes (internal stop)::1 of 39
##Genome-Annotation-Data-END##

Global statistics

Total sequence length681,493
Total ungapped length681,151
Gaps between scaffolds0
Number of scaffolds75
Scaffold N509,666
Scaffold L5026
Number of contigs86
Contig N508,788
Contig L5027
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)75

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced681,49375681,1519,666110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermoprotei archaeon ex4572_64Thermoprotei archaeon ex4572_64

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana