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Source database (GenBank or RefSeq) File type

ASM225696v1

Organism name:

Thiotrichales bacterium 16-46-22 (g-proteobacteria)

Taxonomy check:

Inconclusive

Isolate:

16-46-22

BioSample:

SAMN06622285

BioProject:

PRJNA379596

Submitter:

None

Date:

2017/08/16

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
genus undefined

GenBank assembly accession:

GCA_002256965.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

NCGV01

Assembly method:

idba_ud v. 1

Expected final version:

yes

Genome coverage:

22x

Sequencing technology:

Illumina HiSeq

IDs: 1173941 [UID] 4932448 [GenBank]

See Genome Information for Thiotrichales bacterium 16-46-22

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002256965.1	n/a	n/a	ASM225696v1	Scaffold	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::04/07/2017 19:56:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,688
CDS (total)::1,655
Genes (coding)::1,605
CDS (coding)::1,605
Genes (RNA)::33
rRNAs:: 
complete rRNAs:: 
partial rRNAs:: 
tRNAs::31
ncRNAs::2
Pseudo Genes (total)::50
Pseudo Genes (ambiguous residues)::4 of 50
Pseudo Genes (frameshifted)::29 of 50
Pseudo Genes (incomplete)::15 of 50
Pseudo Genes (internal stop)::5 of 50
Pseudo Genes (multiple problems)::3 of 50
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,641,589
Total ungapped length	1,641,443
Gaps between scaffolds	0
Number of scaffolds	173
Scaffold N50	12,568
Scaffold L50	44
Number of contigs	180
Contig N50	12,568
Contig L50	44
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	173

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	82.71	0.28	0.21

Assembly

Genome Assembly

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ASM225696v1

See Genome Information for Thiotrichales bacterium 16-46-22

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result