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ASM229983v1

Organism name:
Nitrospiraceae bacterium UBA665 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
UBA665
BioSample:
SAMN06457815
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/09/12
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002299835.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DBNT01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
37.39x
Sequencing technology:
Illumina

IDs: 1196381 [UID] 5006848 [GenBank]

See Genome Information for Nitrospiraceae bacterium UBA665

History (Show revision history)

Comment

Global statistics

Total sequence length2,024,423
Total ungapped length2,013,358
Gaps between scaffolds0
Number of scaffolds173
Scaffold N5017,151
Scaffold L5036
Number of contigs206
Contig N5014,829
Contig L5040
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)173

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,024,4231732,013,35817,151330

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Nitrospiraceae bacterium UBA665Nitrospiraceae bacterium UBA665

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001514535.1Thermodesulfovibrio aggreganstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.190.020.02

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena
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