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ASM233133v1

Organism name:
Nitrospira sp. UBA2082 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
UBA2082
BioSample:
SAMN06457483
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/09/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_002331335.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DCZO01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
25.5x
Sequencing technology:
Illumina

IDs: 1214071 [UID] 5053088 [GenBank]

See Genome Information for Nitrospira sp. UBA2082

History (Show revision history)

Comment

Global statistics

Total sequence length3,563,798
Total ungapped length3,551,974
Gaps between scaffolds0
Number of scaffolds37
Scaffold N50247,396
Scaffold L506
Number of contigs156
Contig N5051,487
Contig L5021
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)37

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,563,798373,551,974247,3961190

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Nitrospira sp. UBA2082Nitrospira sp. UBA2082

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001273775.1Nitrospira moscoviensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type79.843.142.43

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena