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Source database (GenBank or RefSeq) File type

ASM238392v1

Organism name:: Campylobacter sp. 3 (e-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: 3
BioSample:: SAMN06277492
BioProject:: PRJNA203445
Submitter:: University of California at Davis
Date:: 2017/09/27
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_002383925.1 (latest)
RefSeq assembly accession:: GCF_002383925.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: NXBG01
Assembly method:: ABySS v. 1.5.2
Expected final version:: yes
Genome coverage:: 100.0x
Sequencing technology:: Illumina HiSeq

IDs: 1240471 [UID] 5121128 [GenBank] 5141738 [RefSeq]

See Genome Information for Campylobacter sp. 3

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002383925.1	=	GCF_002383925.1	ASM238392v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from Weimer lab.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::09/22/2017 16:37:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,704
CDS (total)::1,651
Genes (coding)::1,606
CDS (coding)::1,606
Genes (RNA)::53
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::41
ncRNAs::3
Pseudo Genes (total)::45
Pseudo Genes (ambiguous residues)::0 of 45
Pseudo Genes (frameshifted)::36 of 45
Pseudo Genes (incomplete)::14 of 45
Pseudo Genes (internal stop)::2 of 45
Pseudo Genes (multiple problems)::7 of 45
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,636,030
Total ungapped length	1,635,844
Gaps between scaffolds	0
Number of scaffolds	40
Scaffold N50	112,650
Scaffold L50	6
Number of contigs	41
Contig N50	112,650
Contig L50	6
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	40

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	97.90	90.29	86.25

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ASM238392v1

See Genome Information for Campylobacter sp. 3

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

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