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ASM238399v1

Organism name:
Campylobacter sp. 1 (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 1
BioSample:
SAMN06277490
BioProject:
PRJNA203445
Submitter:
University of California at Davis
Date:
2017/09/27
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002383995.1 (latest)
RefSeq assembly accession:
GCF_002383995.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NXBF01
Assembly method:
ABySS v. 1.5.2
Expected final version:
yes
Genome coverage:
90.0x
Sequencing technology:
Illumina HiSeq

IDs: 1240501 [UID] 5121188 [GenBank] 5142358 [RefSeq]

See Genome Information for Campylobacter sp. 1

History (Show revision history)

Comment

Bacteria and source DNA available from Weimer lab.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/22/2017 16:47:22
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,756
CDS (total)::1,713
Genes (coding)::1,626
CDS (coding)::1,626
Genes (RNA)::43
rRNAs::1, 2, 3 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 2 (16S, 23S)
tRNAs::34
ncRNAs::3
Pseudo Genes (total)::87
Pseudo Genes (ambiguous residues)::0 of 87
Pseudo Genes (frameshifted)::69 of 87
Pseudo Genes (incomplete)::13 of 87
Pseudo Genes (internal stop)::16 of 87
Pseudo Genes (multiple problems)::11 of 87
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,666,683
Total ungapped length1,666,683
Number of contigs56
Contig N50105,045
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)56

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,666,683561,666,683105,04500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacter sp. 1Campylobacter sp. 1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001457695.1Campylobacter jejunitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.7691.4686.29

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna