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Source database (GenBank or RefSeq) File type

ASM275476v1

Anomalous assembly.

Organism name:

mixed sample (unclassified sequences)

BioSample:

SAMN05780989

BioProject:

PRJNA343143

Submitter:

Mount Sinai School of Medicine

Date:

2017/11/06

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Assembly anomaly:

mixed culture

Excluded from RefSeq:

mixed culture

GenBank assembly accession:

GCA_002754765.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

PDZQ01

Assembly method:

HGAP v. 3

Expected final version:

yes

Genome coverage:

Not Applicable

Sequencing technology:

PacBio

IDs: 1430831 [UID] 5620488 [GenBank]

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002754765.1	n/a	n/a	ASM275476v1	Scaffold	Latest GenBank

Comment

Contigs were assembled from a "mock" community consisting of reads combined from 8 separate sequencing runs of individual isolates: Escherichia coli MG1655, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides vulgatus ATCC 8492, Collinsella aerofaciens ... ATCC 25986, Clostridium bolteae ATCC BAA-613, and Ruminococcus gnavus ATCC 29149. Reads from all 8 species were first combined, then assembled as a single set of reads.  more

Global statistics

Total sequence length	40,112,520
Total ungapped length	40,112,520
Gaps between scaffolds	0
Number of scaffolds	330
Scaffold N50	983,523
Scaffold L50	11
Number of contigs	330
Contig N50	983,523
Contig L50	11
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	330

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Plasmid p5482_B_theta	n/a	n/a	n/a	1
unplaced	n/a	n/a	n/a	329

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	40,112,520	330	40,112,520	983,523	0	0
Plasmid p5482_B_theta	AllAssembled moleculeUnlocalized scaffolds	41,660041,660	101	41,660041,660	41,660041,660	000	000
unplaced	Assembled molecule	40,070,860	329	40,070,860	983,523	0	0

Assembly

Genome Assembly

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ASM275476v1

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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