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ASM293223v1

Organism name:
Rathayibacter sp. AY1E3 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AY1E3
BioSample:
SAMN08438781
BioProject:
PRJNA432233
Submitter:
Oregon State University
Date:
2018/02/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002932235.1 (latest)
RefSeq assembly accession:
GCF_002932235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PSVN01
Assembly method:
SPAdes v. 3.11.1
Expected final version:
yes
Genome coverage:
200.181x
Sequencing technology:
Illumina HiSeq

IDs: 1563461 [UID] 6028058 [GenBank] 6030748 [RefSeq]

See Genome Information for Rathayibacter sp. AY1E3

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/13/2018 23:15:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,346
CDS (total)::3,293
Genes (coding)::3,226
CDS (coding)::3,226
Genes (RNA)::53
rRNAs::1, 2, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::1, 2 (16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::67
Pseudo Genes (ambiguous residues)::0 of 67
Pseudo Genes (frameshifted)::15 of 67
Pseudo Genes (incomplete)::47 of 67
Pseudo Genes (internal stop)::9 of 67
Pseudo Genes (multiple problems)::4 of 67
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,527,205
Total ungapped length3,527,002
Gaps between scaffolds0
Number of scaffolds54
Scaffold N50171,705
Scaffold L508
Number of contigs57
Contig N50171,705
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)54

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,527,205543,527,002171,70530

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rathayibacter sp. AY1E3Rathayibacter sp. AY1E3

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002932875.1Rathayibacter triticitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.0267.4574.97

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna