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ASM293261v1

Organism name:
Rathayibacter toxicus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FH142
BioSample:
SAMN08438736
BioProject:
PRJNA432233
Submitter:
Oregon State University
Date:
2018/02/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002932615.1 (latest)
RefSeq assembly accession:
GCF_002932615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PSXG01
Assembly method:
SPAdes v. 3.7.0
Expected final version:
yes
Genome coverage:
630.447x
Sequencing technology:
Illumina HiSeq

IDs: 1563631 [UID] 6028398 [GenBank] 6031048 [RefSeq]

See Genome Information for Rathayibacter toxicus

There are 40 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/14/2018 00:44:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,149
CDS (total)::2,096
Genes (coding)::2,058
CDS (coding)::2,058
Genes (RNA)::53
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (5S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::38
Pseudo Genes (ambiguous residues)::0 of 38
Pseudo Genes (frameshifted)::17 of 38
Pseudo Genes (incomplete)::25 of 38
Pseudo Genes (internal stop)::7 of 38
Pseudo Genes (multiple problems)::11 of 38
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,310,024
Total ungapped length2,310,024
Number of contigs15
Contig N50564,884
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)15

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,310,024152,310,024564,88400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rathayibacter toxicusRathayibacter toxicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014770185.1Rathayibacter toxicustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014770185.1Rathayibacter toxicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9898.54
Best-match type99.9999.9898.54

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna