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Source database (GenBank or RefSeq) File type

ASM293281v1

Organism name:: Rathayibacter sp. AY1B4 (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: AY1B4
BioSample:: SAMN08438755
BioProject:: PRJNA432233
Submitter:: Oregon State University
Date:: 2018/02/18
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_002932815.1 (latest)
RefSeq assembly accession:: GCF_002932815.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: PSWN01
Assembly method:: SPAdes v. 3.11.1
Expected final version:: yes
Genome coverage:: 182.96x
Sequencing technology:: Illumina HiSeq

IDs: 1563731 [UID] 6028608 [GenBank] 6032008 [RefSeq]

See Genome Information for Rathayibacter sp. AY1B4

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002932815.1	=	GCF_002932815.1	ASM293281v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::02/14/2018 01:19:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,346
CDS (total)::3,292
Genes (coding)::3,233
CDS (coding)::3,233
Genes (RNA)::54
rRNAs::1, 3, 2 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::3, 2 (16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::59
Pseudo Genes (ambiguous residues)::0 of 59
Pseudo Genes (frameshifted)::8 of 59
Pseudo Genes (incomplete)::48 of 59
Pseudo Genes (internal stop)::4 of 59
Pseudo Genes (multiple problems)::1 of 59
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,539,003
Total ungapped length	3,538,906
Gaps between scaffolds	0
Number of scaffolds	62
Scaffold N50	150,738
Scaffold L50	9
Number of contigs	63
Contig N50	150,738
Contig L50	9
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	62

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	90.03	68.54	76.42

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ASM293281v1

See Genome Information for Rathayibacter sp. AY1B4

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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