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ASM293321v1

Organism name:
Rathayibacter rathayi (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Z007
BioSample:
SAMN08438726
BioProject:
PRJNA432233
Submitter:
Oregon State University
Date:
2018/02/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002933215.1 (latest)
RefSeq assembly accession:
GCF_002933215.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PSXQ01
Assembly method:
SPAdes v. 3.7.0
Expected final version:
yes
Genome coverage:
276.039x
Sequencing technology:
Illumina HiSeq

IDs: 1563931 [UID] 6028998 [GenBank] 6032268 [RefSeq]

See Genome Information for Rathayibacter rathayi

There are 27 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/14/2018 03:16:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,922
CDS (total)::2,871
Genes (coding)::2,800
CDS (coding)::2,800
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::71
Pseudo Genes (ambiguous residues)::0 of 71
Pseudo Genes (frameshifted)::30 of 71
Pseudo Genes (incomplete)::45 of 71
Pseudo Genes (internal stop)::9 of 71
Pseudo Genes (multiple problems)::12 of 71
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,055,270
Total ungapped length3,055,023
Gaps between scaffolds0
Number of scaffolds70
Scaffold N5091,005
Scaffold L5012
Number of contigs71
Contig N5091,005
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)70

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,055,270703,055,02391,00510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rathayibacter rathayiRathayibacter rathayi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004011095.1Rathayibacter rathayitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004011095.1Rathayibacter rathayitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3195.7594.24
Best-match type99.3195.7594.24

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna