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ASM294397v1

Organism name:
Enterococcus faecalis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CVM N60027F
BioSample:
SAMN07982070
BioProject:
PRJNA292669
Submitter:
FDA
Date:
2018/02/26
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002943975.1 (latest)
RefSeq assembly accession:
GCF_002943975.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PTUY01
Assembly method:
CLC Genomics Workbench v. 10.1
Expected final version:
yes
Genome coverage:
97.48x
Sequencing technology:
Illumina MiSeq

IDs: 1588781 [UID] 6086688 [GenBank] 6142298 [RefSeq]

See Genome Information for Enterococcus faecalis

There are 8808 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/21/2018 13:54:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,802
CDS (total)::2,746
Genes (coding)::2,697
CDS (coding)::2,697
Genes (RNA)::56
rRNAs::1, 3, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::2 (16S)
tRNAs::47
ncRNAs::4
Pseudo Genes (total)::49
Pseudo Genes (ambiguous residues)::0 of 49
Pseudo Genes (frameshifted)::21 of 49
Pseudo Genes (incomplete)::20 of 49
Pseudo Genes (internal stop)::15 of 49
Pseudo Genes (multiple problems)::7 of 49
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,782,488
Total ungapped length2,782,488
Number of contigs83
Contig N5057,895
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)83

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,782,488832,782,48857,89500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus faecalisEnterococcus faecalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000392875.1Enterococcus faecalis ATCC 19433 = NBRC 100480type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000392875.1Enterococcus faecalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1288.7085.80
Best-match type99.1288.7085.80

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna