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ASM302292v1

Organism name:
Halobacteriales archaeon QS_8_65_32 (euryarchaeotes)
Taxonomy check:
Inconclusive
Isolate:
QS_8_65_32
BioSample:
SAMN06020789
BioProject:
PRJNA351262
Submitter:
None
Date:
2018/03/27
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_003022925.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PXRY01
Assembly method:
IDBA_UD v. 06.01.2014s
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 1653451 [UID] 6297038 [GenBank]

See Genome Information for Halobacteriales archaeon QS_8_65_32

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/14/2018 14:55:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,284
CDS (total)::3,250
Genes (coding)::2,999
CDS (coding)::2,999
Genes (RNA)::34
rRNAs::1 (16S)
complete rRNAs::
partial rRNAs::1 (16S)
tRNAs::31
ncRNAs::2
Pseudo Genes (total)::251
Pseudo Genes (ambiguous residues)::7 of 251
Pseudo Genes (frameshifted)::152 of 251
Pseudo Genes (incomplete)::78 of 251
Pseudo Genes (internal stop)::67 of 251
Pseudo Genes (multiple problems)::52 of 251
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,278,370
Total ungapped length3,273,446
Gaps between scaffolds0
Number of scaffolds127
Scaffold N5035,086
Scaffold L5034
Number of contigs182
Contig N5025,637
Contig L5045
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)127

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,278,3701273,273,44635,086550

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Halobacteriales archaeon QS_8_65_32Halobacteriales archaeon QS_8_65_32

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004698125.1Halosimplex halophilumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.230.780.56

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena