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ASM324433v1

Organism name:
Enterococcus faecium (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 1531
BioSample:
SAMN09273504
BioProject:
PRJNA278440
Submitter:
University of Sao Paulo
Date:
2018/06/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003244335.1 (latest)
RefSeq assembly accession:
GCF_003244335.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QHLC01
Assembly method:
VelvetOptimiser v. 2.2.5
Expected final version:
yes
Genome coverage:
30.0x
Sequencing technology:
Illumina MiSeq

IDs: 1761951 [UID] 6676778 [GenBank] 6704288 [RefSeq]

See Genome Information for Enterococcus faecium

There are 23391 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/30/2018 12:58:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,313
CDS (total)::3,241
Genes (coding)::3,078
CDS (coding)::3,078
Genes (RNA)::72
rRNAs::2, 1, 2 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1, 1, 2 (5S, 16S, 23S)
tRNAs::63
ncRNAs::4
Pseudo Genes (total)::163
Pseudo Genes (ambiguous residues)::0 of 163
Pseudo Genes (frameshifted)::62 of 163
Pseudo Genes (incomplete)::81 of 163
Pseudo Genes (internal stop)::52 of 163
Pseudo Genes (multiple problems)::30 of 163
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,054,607
Total ungapped length3,054,607
Number of contigs433
Contig N5020,444
Contig L5046
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)433

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,054,6074333,054,60720,44400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus faeciumEnterococcus faecium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001544255.1Enterococcus faecium NBRC 100486type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001544255.1Enterococcus faeciumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.6275.9193.32
Best-match type99.6275.9193.32

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna