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ASM328656v2

Organism name:
Aerococcus mictus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: UMB7382
BioSample:
SAMN08895454
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2024/02/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003286565.2 (latest)
RefSeq assembly accession:
GCF_003286565.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QMHL02
Assembly method:
SPAdes v. SPAdes-3.15.4
Expected final version:
no
Genome coverage:
140.0x
Sequencing technology:
Illumina

IDs: 21413951 [UID] 53935518 [GenBank] 53954608 [RefSeq]

See Genome Information for Aerococcus mictus

Pathogen Detection Resources

There are 45 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/14/2024 16:36:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,148
CDSs (total)::2,086
Genes (coding)::2,070
CDSs (with protein)::2,070
Genes (RNA)::62
rRNAs::2, 1 (5S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::1 (23S)
tRNAs::55
ncRNAs::4
Pseudo Genes (total)::16
CDSs (without protein)::16
Pseudo Genes (ambiguous residues)::0 of 16
Pseudo Genes (frameshifted)::4 of 16
Pseudo Genes (incomplete)::12 of 16
Pseudo Genes (internal stop)::2 of 16
Pseudo Genes (multiple problems)::2 of 16
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,212,315
Total ungapped length2,212,035
Gaps between scaffolds0
Number of scaffolds82
Scaffold N50278,307
Scaffold L504
Number of contigs92
Contig N50278,307
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)82

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,212,315822,212,035278,307100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aerococcus mictusAerococcus mictus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003286595.3Aerococcus mictustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003286595.3Aerococcus mictustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.3779.9883.27
Best-match type96.3779.9883.27

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna