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ASM333336v1

Organism name:
Enterococcus faecium (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: IHC15
BioSample:
SAMN05413860
BioProject:
PRJNA329509
Submitter:
Intermountain Healthcare
Date:
2018/07/21
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003333365.1 (latest)
RefSeq assembly accession:
GCF_003333365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QOJD01
Assembly method:
CLC NGS Cell v. 9.1
Expected final version:
yes
Genome coverage:
30.0x
Sequencing technology:
Illumina MiSeq

IDs: 1830831 [UID] 6932378 [GenBank] 6949678 [RefSeq]

See Genome Information for Enterococcus faecium

There are 23391 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/10/2018 13:59:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,210
CDS (total)::3,145
Genes (coding)::2,996
CDS (coding)::2,996
Genes (RNA)::65
rRNAs::2, 1, 3 (5S, 16S, 23S)
complete rRNAs::2, 1 (5S, 16S)
partial rRNAs::3 (23S)
tRNAs::55
ncRNAs::4
Pseudo Genes (total)::149
Pseudo Genes (ambiguous residues)::0 of 149
Pseudo Genes (frameshifted)::62 of 149
Pseudo Genes (incomplete)::71 of 149
Pseudo Genes (internal stop)::44 of 149
Pseudo Genes (multiple problems)::25 of 149
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,920,337
Total ungapped length2,920,337
Number of contigs549
Contig N5011,956
Contig L5076
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)549

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,920,3375492,920,33711,95600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus faeciumEnterococcus faecium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001544255.1Enterococcus faecium NBRC 100486type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001544255.1Enterococcus faeciumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5279.4893.41
Best-match type99.5279.4893.41

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna