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ASM340179v1

Organism name:
Drosophila melanogaster (fruit fly)
Infraspecific name:
Breed: BS 1
Infraspecific name:
Strain: A3
Sex:
male
BioSample:
SAMN08026569
BioProject:
PRJNA418342
Submitter:
University of California - Irvine
Date:
2018/08/17
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_003401795.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PGRL01
Assembly method:
Canu v. 1.3; DBG2OLC v. 1.0
Expected final version:
yes
Genome coverage:
36.7x
Sequencing technology:
PacBio

IDs: 1870851 [UID] 7101168 [GenBank]

See Genome Information for Drosophila melanogaster

There are 119 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length133,341,829
Total ungapped length133,334,329
Gaps between scaffolds0
Number of scaffolds44
Scaffold N5024,769,044
Scaffold L503
Number of contigs119
Contig N5021,694,469
Contig L503
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)44

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_003401815.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XCM010548.1n/an/a0
Chromosome 2LCM010549.1n/an/a0
Chromosome 2RCM010550.1n/an/a0
Chromosome 3LCM010551.1n/an/a0
Chromosome 3RCM010552.1n/an/a0
Chromosome 4CM010553.1n/an/a0
unplacedn/an/an/a37

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All133,322,94143133,315,44124,769,044750
Chromosome X23,803,708123,802,10823,803,708160
Chromosome 2L23,344,392123,343,99223,344,39240
Chromosome 2R24,769,044124,767,44424,769,044160
Chromosome 3L27,527,603127,526,00327,527,603160
Chromosome 3R31,185,871131,183,67131,185,871220
Chromosome 41,355,50011,355,4001,355,50010
unplaced1,336,823371,336,82345,76000
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT18,888118,88818,88800