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ASM340185v1

Organism name:
Drosophila melanogaster (fruit fly)
Infraspecific name:
Breed: VAG 1
Infraspecific name:
Strain: A5
Sex:
male
BioSample:
SAMN08026571
BioProject:
PRJNA418342
Submitter:
University of California - Irvine
Date:
2018/08/17
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_003401855.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PGRN01
Assembly method:
Canu v. 1.3; DBG2OLC v. 1.0
Expected final version:
yes
Genome coverage:
63x
Sequencing technology:
PacBio

IDs: 1870871 [UID] 7101188 [GenBank]

See Genome Information for Drosophila melanogaster

There are 119 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length138,931,909
Total ungapped length138,925,411
Gaps between scaffolds0
Number of scaffolds99
Scaffold N5025,355,509
Scaffold L503
Number of contigs164
Contig N5020,968,353
Contig L503
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)99

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_003401865.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XCM010562.1n/an/a0
Chromosome 2LCM010563.1n/an/a0
Chromosome 2RCM010564.1n/an/a0
Chromosome 3LCM010565.1n/an/a0
Chromosome 3RCM010566.1n/an/a0
Chromosome 4CM010567.1n/an/a0
unplacedn/an/an/a92

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All138,911,95898138,905,46025,355,509650
Chromosome X23,835,283123,833,78523,835,283150
Chromosome 2L23,721,343123,720,94323,721,34340
Chromosome 2R25,355,509125,354,20925,355,509130
Chromosome 3L27,880,024127,879,02427,880,024100
Chromosome 3R32,277,891132,275,79132,277,891210
Chromosome 41,368,41211,368,2121,368,41220
unplaced4,473,496924,473,49661,53800
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT19,951119,95119,95100