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ASM340188v1

Organism name:
Drosophila melanogaster (fruit fly)
Infraspecific name:
Breed: Wild 5B
Infraspecific name:
Strain: A6
Sex:
male
BioSample:
SAMN08026572
BioProject:
PRJNA418342
Submitter:
University of California - Irvine
Date:
2018/08/17
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_003401885.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PGRO01
Assembly method:
Canu v. 1.3; DBG2OLC v. 1.0
Expected final version:
yes
Genome coverage:
35.6x
Sequencing technology:
PacBio

IDs: 1870881 [UID] 7101198 [GenBank]

See Genome Information for Drosophila melanogaster

There are 118 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length133,227,439
Total ungapped length133,220,439
Gaps between scaffolds0
Number of scaffolds29
Scaffold N5024,418,017
Scaffold L503
Number of contigs99
Contig N5021,561,544
Contig L503
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)29

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_003401895.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XCM010569.1n/an/a0
Chromosome 2LCM010570.1n/an/a0
Chromosome 2RCM010571.1n/an/a0
Chromosome 3LCM010572.1n/an/a0
Chromosome 3RCM010573.1n/an/a0
Chromosome 4CM010574.1n/an/a0
unplacedn/an/an/a22

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All133,208,32028133,201,32024,418,017700
Chromosome X23,314,574123,313,17423,314,574140
Chromosome 2L23,538,804123,538,60423,538,80420
Chromosome 2R24,418,017124,416,21724,418,017180
Chromosome 3L27,634,359127,633,75927,634,35960
Chromosome 3R31,499,997131,497,19731,499,997280
Chromosome 41,452,69711,452,4971,452,69720
unplaced1,349,872221,349,872134,43400
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT19,119119,11919,11900