U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM340201v1

Organism name:
Drosophila melanogaster (fruit fly)
Infraspecific name:
Strain: ORE
Sex:
male
BioSample:
SAMN08026581
BioProject:
PRJNA418342
Submitter:
University of California - Irvine
Date:
2018/08/17
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_003402015.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PGRW01
Assembly method:
Canu v. 1.3; DBG2OLC v. 1.0
Expected final version:
yes
Genome coverage:
89x
Sequencing technology:
PacBio

IDs: 1870821 [UID] 7101138 [GenBank]

See Genome Information for Drosophila melanogaster

There are 119 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length136,257,826
Total ungapped length136,250,326
Gaps between scaffolds0
Number of scaffolds75
Scaffold N5025,138,591
Scaffold L503
Number of contigs150
Contig N5021,483,821
Contig L503
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)75

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_003402045.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XCM010513.1n/an/a0
Chromosome 2LCM010514.1n/an/a0
Chromosome 2RCM010515.1n/an/a0
Chromosome 3LCM010516.1n/an/a0
Chromosome 3RCM010517.1n/an/a0
Chromosome 4CM010518.1n/an/a0
unplacedn/an/an/a68

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All136,238,30074136,230,80025,138,591750
Chromosome X23,690,577123,688,87723,690,577170
Chromosome 2L23,451,996123,451,49623,451,99650
Chromosome 2R25,138,591125,137,09125,138,591150
Chromosome 3L27,797,478127,796,27827,797,478120
Chromosome 3R31,939,618131,937,31831,939,618230
Chromosome 41,331,54611,331,2461,331,54630
unplaced2,888,494682,888,49449,64200
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT19,526119,52619,52600