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ASM343395v1

Organism name:
Anaerococcus nagyae (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: OF01-3
BioSample:
SAMN09736673
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003433955.1 (latest)
RefSeq assembly accession:
GCF_003433955.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QVEU01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1909071 [UID] 7205178 [GenBank] 7268278 [RefSeq]

See Genome Information for Anaerococcus nagyae

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/16/2018 17:58:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,750
CDS (total)::1,695
Genes (coding)::1,657
CDS (coding)::1,657
Genes (RNA)::55
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::38
Pseudo Genes (ambiguous residues)::1 of 38
Pseudo Genes (frameshifted)::23 of 38
Pseudo Genes (incomplete)::18 of 38
Pseudo Genes (internal stop)::14 of 38
Pseudo Genes (multiple problems)::16 of 38
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,825,047
Total ungapped length1,825,027
Gaps between scaffolds0
Number of scaffolds16
Scaffold N50316,868
Scaffold L503
Number of contigs18
Contig N50314,939
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)16

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,825,047161,825,027316,86820

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Anaerococcus nagyaeAnaerococcus nagyae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_017874535.1Anaerococcus nagyaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017874535.1Anaerococcus nagyaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1289.7093.47
Best-match type99.1289.7093.47

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna