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ASM343446v1

Organism name:
Enterobacter sp. AM17-18 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM17-18
BioSample:
SAMN09734844
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003434465.1 (latest)
RefSeq assembly accession:
GCF_003434465.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QTLJ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1909331 [UID] 7205688 [GenBank] 7269358 [RefSeq]

See Genome Information for Enterobacter sp. AM17-18

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/07/2018 20:22:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,837
CDS (total)::4,743
Genes (coding)::4,620
CDS (coding)::4,620
Genes (RNA)::94
rRNAs::3, 1, 2 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (23S)
tRNAs::81
ncRNAs::7
Pseudo Genes (total)::123
Pseudo Genes (ambiguous residues)::1 of 123
Pseudo Genes (frameshifted)::53 of 123
Pseudo Genes (incomplete)::63 of 123
Pseudo Genes (internal stop)::39 of 123
Pseudo Genes (multiple problems)::29 of 123
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,918,299
Total ungapped length4,917,842
Gaps between scaffolds0
Number of scaffolds54
Scaffold N50217,039
Scaffold L508
Number of contigs76
Contig N50166,225
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)54

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,918,299544,917,842217,039220

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter sp. AM17-18Enterobacter sp. AM17-18

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729765.1Enterobacter kobeitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.0686.7886.61

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna